Biomedical Informatics Publications

• Okeke N, Hennessey KC, Sitapati AM, Weisshaar D, Shah NP, Alicki R, Haft H.  Sustainable Approach to Justice, Equity, Diversity, and Inclusion Through Better Quality Measurement.   Circ Cardiovasc Qual Outcomes. 2024 Apr 15:e010791. doi: 10.1161/CIRCOUTCOMES.123.010791. Online ahead of print.  PMID: 38618717 Review.
• Pham TT, Loo TM, Malhotra A, Longhurst CA, Hylton D, Dameff C, Tully J, Wardi G, Sell RE, Pearce AK.  Ransomware Cyberattack Associated With Cardiac Arrest Incidence and Outcomes at Untargeted, Adjacent Hospitals.  Crit Care Explor. 2024 Apr 10;6(4):e1079. doi: 10.1097/CCE.0000000000001079. eCollection 2024 Apr. PMID: 38605720
• Baxter SL, Longhurst CA, Millen M, Sitapati AM, Tai-Seale M.  Generative artificial intelligence responses to patient messages in the electronic health record: early lessons learned.  JAMIA Open. 2024 Apr 10;7(2):ooae028. doi: 10.1093/jamiaopen/ooae028. eCollection 2024 Jul.  PMID: 38601475
• Goldhaber NH, Mehta S, Longhurst CA, Malachowski E, Jones M, Clary BM, Schaefer RL, McHale M, Rhodes LP, Mekeel KL, Reeves JJ.  Call me Ishmael: addressing the white whale of team communication in the operating room with labelled surgical caps at an academic medical centre. BMJ Open Qual. 2024 Apr 8;13(2):e002453. doi: 10.1136/bmjoq-2023-002453.  PMID: 38589054
• Zhang M, Kuo TT.  Early prediction of long hospital stay for Intensive Care units readmission patients using medication information.  Comput Biol Med. 2024 Apr 8;174:108451. doi: 10.1016/j.compbiomed.2024.108451. Online ahead of print. PMID: 38603899
• Voices of All of Us: Dr. Sally Baxter: A Bold Vision for Big Data and Health Equity Sally Baxter, M.D., MSc., is a physician-scientist using All of Us data to study vision loss. She’s also a program participant. In college, Dr. Baxter interned at a mobile clinic that gave vision screenings to children in underserved communities. Now, she studies ways to predict risk for glaucoma—one of the leading causes of blindness. And she’s spreading her passion for learning and growth to the early-career researchers she trains. Article Link: March 2024 | Join All of Us
• Patel SP, Wang R, Zhou SQ, Sheinson D, Johnson A, Lee JS.  Validation of an Updated Algorithm to Identify Patients With Incident Non-Small Cell Lung Cancer in Administrative Claims Databases.  JCO Clin Cancer Inform. 2024 Mar;8:e2300165. doi: 10.1200/CCI.23.00165.  PMID: 38502111
• Krause M, Mehdipour S, Veerapong J, Baumgartner JM, Lowy AM, Gabriel RA.   Development of a predictive model for risk stratification of acute kidney injury in patients undergoing cytoreductive surgery with hyperthermic intraperitoneal chemotherapy.   Sci Rep. 2024 Mar 19;14(1):6630. doi: 10.1038/s41598-024-54979-w.  PMID: 38503776
• Christopher M, Hallaj S, Jiravarnsirikul A, Baxter SL, Zangwill LM.  Novel Technologies in Artificial Intelligence and Telemedicine for Glaucoma Screening.  J Glaucoma. 2024 Mar 20. doi: 10.1097/IJG.0000000000002367. Online ahead of print. PMID: 38506792
• Garcia P, Ma SP, Shah S, Smith M, Jeong Y, Devon-Sand A, Tai-Seale M, Takazawa K, Clutter D, Vogt K, Lugtu C, Rojo M, Lin S, Shanafelt T, Pfeffer MA, Sharp C.   Artificial Intelligence-Generated Draft Replies to Patient Inbox Messages.  JAMA Netw Open. 2024 Mar 4;7(3):e243201. doi: 10.1001/jamanetworkopen.2024.3201.  PMID: 38506805
• Stults CD, Mazor KM, Cheung M, Ruo B, Li M, Walker A, Saphirak C, Vaida F, Singh S, Fisher KA, Rosen R, Yood R, Garber L, Longhurst C, Kallenberg G, Yu E, Chan A, Millen M, Tai-Seale M.  Patients' Perspectives on Plans Generated During Primary Care Visits and Self-Reported Adherence at 3 Months: Data From a Randomized Trial.  J Particip Med. 2024 Mar 14;16:e50242. doi: 10.2196/50242.  PMID: 38483458
• Arthur TD, Nguyen JP, D'Antonio-Chronowska A, Matsui H, Silva NS, Joshua IN; iPSCORE Consortium; Luchessi AD, Greenwald WWY, D'Antonio M, Pera MF, Frazer KA.  Complex regulatory networks influence pluripotent cell state transitions in human iPSCs. Nat Commun. 2024 Feb 23;15(1):1664. doi: 10.1038/s41467-024-45506-6. PMID: 38395976
• Nibbelink CW, Dunn Lopez K, Reeves JJ, Horman S, El-Kareh RE.  Nurse and Physician Perceptions and Decision Making During Interdisciplinary Communication: Factors That Influence Communication Channel Selection. Comput Inform Nurs. 2024 Feb 12. doi: 10.1097/CIN.0000000000001108. Online ahead of print.  dPMID: 38335993
• Kwan B, Bell JF, Longhurst CA, Goldhaber NH, Clay B.  Implementation of an electronic health record-integrated instant messaging system in an academic health system.  J Am Med Inform Assoc. 2024 Jan 29:ocad253. doi: 10.1093/jamia/ocad253. Online ahead of print.  PMID: 38287641
• Boussina A, Shashikumar SP, Malhotra A, Owens RL, El-Kareh R, Longhurst CA, Quintero K, Donahue A, Chan TC, Nemati S, Wardi G.  Impact of a deep learning sepsis prediction model on quality of care and survival.   NPJ Digit Med. 2024 Jan 23;7(1):14. doi: 10.1038/s41746-023-00986-6.  PMID: 38263386
• Kwan B, Engel J, Steele B, Oyama L, Longhurst CA, El-Kareh R, Daniel M, Goldberg C, Clay B.  An Automated System for Physician Trainee Procedure Logging via Electronic Health Records.  JAMA Netw Open. 2024 Jan 2;7(1):e2352370. doi: 10.1001/jamanetworkopen.2023.52370.  PMID: 38265802
• Boussina A, Chan T, Donahue A, El-Kareh R, Malhotra A, Owens R, Quintero K, Shashikumar S. Study: AI Surveillance Tool Successfully Helps to Predict Sepsis, Saves Lives (ucsd.edu)  The study was funded, in part, by the National Institutes of Health (grants K23GM146092, R01LM013998, R42AI177108 and R35GM143121), the National Library of Medicine (grant 2T15LM011271-11), and the Joan and Irwin Jacobs Center for Health Innovation at UC San Diego Health.
• Keehner J, Abeles SR, Longhurst CA, Horton LE, Myers FE, Riggs-Rodriguez L, Ahmad M, Baxter S, Boussina A, Cantrell K, Cardenas P, De Hoff P, El-Kareh R, Holland J, Ikeda D, Kurashige K, Laurent LC; SEARCH Alliance; Lucas A, Pride D, Sathe S, Tran AR, Vasylyeva TI, Yeo G, Knight R, Wertheim JO, Torriani FJ.  Integrated Genomic and Social Network Analyses of Severe Acute Respiratory Syndrome Coronavirus 2 Transmission in the Healthcare Setting.  Clin Infect Dis. 2024 Jan 16:ciad738. doi: 10.1093/cid/ciad738. Online ahead of print. PMID: 38227643
• Klie A, Laub D, Talwar JV, Stites H, Jores T, Solvason JJ, Farley EK, Carter H. Predictive analyses of regulatory sequences with EUGENe. Nat Comput Sci. 2023 Nov;3(11):946-956. doi: 10.1038/s43588-023-00544-w. Epub 2023 Nov 16. PMID: 38177592
• Somayajula SA, Litake O, Liang Y, Hosseini R, Nemati S, Wilson DO, Weinreb RN, Malhotra A, Xie P. Improving long COVID-related text classification: a novel end-to-end domain-adaptive paraphrasing framework. Sci Rep. 2024 Jan 2;14(1):85. doi: 10.1038/s41598-023-48594-4. PMID: 38168099 
• Singh K, Kashani K, Awdishu L, Bagshaw S, Barreto E, Evans B, Forni L, Ghosh E, et al, Digital health and acute kidney injury: consensus report of the 27th Acute Disease Quality Initiative workgroup.  PMID: 37580570 DOI: 10.1038/s41581-023-00744-7
• Montazid S, Bandyopadhyay S, Hart DW, Gao N, Johnson B, Thrumurthy SG, Penn DJ, Wernisch B, Bansal M, Altrock PM, Rost F, Gazinska P, Ziolkowski P, Hayee B, Liu Y, Han J, Tessitore A, Koth J, Bodmer WF, East JE, Bennett NC, Tomlinson I, Irshad S. Adult stem cell activity in naked mole rats for long-term tissue maintenance.  Nat Commun. 2023 Dec 20;14(1):8484. doi: 10.1038/s41467-023-44138-6. PMID: 38123565
• Wenger NS, Sanz Vidorreta FJ, Dudley MT, Walling AM, Hogarth M. Consequences of a Health System Not Knowing Which Patients Are Deceased - PubMed (nih.gov)  JAMA Intern Med. 2023 Dec 4:e236428. doi: 10.1001/jamainternmed.2023.6428. PMID: 38048124
• Yousif ZK, Koola JD, Macedo E, Cerda J, Goldstein SL, Chakravarthi R, Lewington A, Selewski D, Zappitelli M, Cruz D, Tolwani A, Joy MS, Jha V, Ramachandran R, Ostermann M, Pandya B, Acharya A, Brophy P, Ponce D, Steinke J, Bouchard J, Irarrazabal CE, Irarrazabal R, Boltansky A, Askenazi D, Kolhe N, Claure-Del Granado R, Benador N, Castledine C, Davenport A, Barratt J, Bhandari S, Riley AA, Davis TK, Farmer C, Hogarth M, Thomas M, Murray PT, Robinson-Cohen C, Nicoletti P, Vaingankar S, Mehta R, Awdishu L.  Clinical Characteristics and Outcomes of Drug-Induced Acute Kidney Injury Cases.  Kidney Int Rep. 2023 Aug 14;8(11):2333-2344. doi: 10.1016/j.ekir.2023.07.037. eCollection 2023 Nov.  PMID: 38025217
• Nguyen JP, Arthur TD, Fujita K, Salgado BM, Donovan MKR; iPSCORE Consortium; Matsui H, Kim JH, D'Antonio-Chronowska A, D'Antonio M, Frazer KA.
  eQTL mapping in fetal-like pancreatic progenitor cells reveals early developmental insights into diabetes risk.  Nat Commun. 2023 Oct 30;14(1):6928. doi: 10.1038/s41467-023-42560-4. PMID: 37903777
• Bruce LK, Kasl P, Soltani S, Viswanath VK, Hartogensis W, Dilchert S, Hecht FM, Chowdhary A, Anglo C, Pandya L, Dasgupta S, Altintas I, Gupta A, Mason AE, Smarr BL.
•  Variability of temperature measurements recorded by a wearable device by biological sex.  Biol Sex Differ. 2023 Nov 1;14(1):76. doi: 10.1186/s13293-023-00558-z. PMID: 37915069
• Boyle EA, Goldberg G, Schmok JC, Burgado J, Izidro Layng F, Grunwald HA, Balotin KM, Cuoco MS, Chang KC, Ecklu-Mensah G, Arakaki AKS, Ahmed N, Garcia Arceo X, Jagannatha P, Pekar J, Iyer M; DASL Alliance; Yeo GW.
   Junior scientists spotlight social bonds in seminars for diversity, equity, and inclusion in STEM.  PLoS One. 2023 Nov 2;18(11):e0293322. doi: 10.1371/journal.pone.0293322. eCollection 2023. PMID: 37917746
• Chen C, Lifset E, Han Y, Roy A, Hogarth M, Moore A, Farcas E, Weibel N.  Screen or No Screen? Lessons Learnt from a Real-World Deployment Study of Using Voice Assistants With and Without Touchscreen for Older Adults.  ASSETS '23: Proceedings of the 25th International ACM SIGACCESS Conference on Computers and Accessibility. doi.acm.org?doi=3597638.3608378.
• Lifset ET, Charles K, Farcas E, Weibel N, Hogarth M, Chen C, Johnson JG, Draper M, Nguyen AL, Moore AA  Ascertaining Whether an Intelligent Voice Assistant Can Meet Older Adults' Health-Related Needs in the Context of a Geriatrics 5Ms Framework.  Gerontol Geriatr Med. 2023 Sep 30;9:23337214231201138. doi: 10.1177/23337214231201138. eCollection 2023 Jan-Dec. PMID: 37790195
• Johnson B, Shuai Y, Schweinsberg J, Curtius K.   cloneRate: fast estimation of single-cell clonal dynamics using coalescent theory.  Bioinformatics. 2023 Sep 12:btad561. doi: 10.1093/bioinformatics/btad561. Online ahead of print. PMID: 37699006
• Classen DC, Longhurst CA, Davis T, Milstein JA, Bates DW.  Inpatient EHR User Experience and Hospital EHR Safety Performance.  JAMA Netw Open. 2023 Sep 5;6(9):e2333152. doi: 10.1001/jamanetworkopen.2023.33152. PMID: 37695581
• Le JP, Shashikumar SP, Malhotra A, Nemati S, Wardi G.  Making the Improbable Possible: Generalizing Models Designed for a Syndrome-Based, Heterogeneous Patient Landscape.  Crit Care Clin. 2023 Oct;39(4):751-768. doi: 10.1016/j.ccc.2023.02.003. Epub 2023 Apr 26. PMID: 37704338 Review.
• Wu JH, Varkhedi V, Radha Saseendrakumar B, Acuff K, Weinreb RN, Baxter SL. Social and Healthcare Utilization Factors Associated With Ophthalmic Visit Non-adherence in Glaucoma: an All of Us study.  J Glaucoma. 2023 Aug 29. doi: 10.1097/IJG.0000000000002300. PMID: 37671531
• Aronoff-Spencer E, Mazrouee S, Graham R, Handcock MS, Nguyen K, Nebeker C, Malekinejad M, Longhurst CA.  Exposure notification system activity as a leading indicator for SARS-COV-2 caseload forecasting.  PLoS One. 2023 Aug 18;18(8):e0287368. doi: 10.1371/journal.pone.0287368. eCollection 2023. PMID: 37594936
• Leggat-Barr K, Ryu R, Hogarth M, Stover-Fiscalini A, Veer LV', Park HL, Lewis T, Thompson C, Borowsky A, Hiatt RA, LaCroix A, Parker B, Madlensky L, Naeim A, Esserman L. Early Ascertainment of Breast Cancer Diagnoses Comparing Self-Reported Questionnaires and Electronic Health Record Data Warehouse: The WISDOM Study.  JCO Clin Cancer Inform. 2023 Aug;7:e2300019. doi: 10.1200/CCI.23.00019. PMID: 37607323
• Aruljothy A, Singh S, Narula N, Moran GW, Vuyyuru SK, Hogan M, Zayadi A, MacDonald JK, Caron B, Danese S, Peyrin Biroulet L, Ma C, Jairath V.  Systematic review with meta-analysis: Medical therapies for treatment of ulcerative proctitis.   Aliment Pharmacol Ther. 2023 Aug 17. doi: 10.1111/apt.17666. Online ahead of print.  PMID: 37589498 Review.
• Kashani KB, Awdishu L, Bagshaw SM, Barreto EF, Claure-Del Granado R, Evans BJ, Forni LG, Ghosh E, Goldstein SL, Kane-Gill SL, Koola J, Koyner JL, Liu M, Murugan R, Nadkarni GN, Neyra JA, Ninan J, Ostermann M, Pannu N, Rashidi P, Ronco C, Rosner MH, Selby NM, Shickel B, Singh K, Soranno DE, Sutherland SM, Bihorac A, Mehta RL.  Digital health and acute kidney injury: consensus report of the 27th Acute Disease Quality Initiative workgroup.  Nat Rev Nephrol. 2023 Aug 14. doi: 10.1038/s41581-023-00744-7. Online ahead of print. PMID: 37580570 Review.
• Acuff K, Radha Saseendrakumar B, Wu JH, Weinreb RN, Baxter SL.  Racial, Ethnic, and Socioeconomic Disparities in Glaucoma Onset and Severity in A Diverse Nationwide Cohort in the United States.  J Glaucoma. 2023 Jul 18. doi: 10.1097/IJG.0000000000002261. Online ahead of print. PMID: 37523618
• Tai-Seale M, Baxter S, Millen M, Cheung M, Zisook S, Çelebi J, Polston G, Sun B, Gross E, Helsten T, Rosen R, Clay B, Sinsky C, Ziedonis DM, Longhurst CA, Savides TJ. Association of physician burnout with perceived EHR work stress and potentially actionable factors.  J Am Med Inform Assoc. 2023 Jul 20:ocad136. doi: 10.1093/jamia/ocad136. Online ahead of print. PMID: 37475168
• Keeler Bruce L, Paul P, Kim KK, Kim J, Keegan THM, Hiatt RA, Ohno-Machado L; All of Us Research Program Investigators.  Family and personal history of cancer in the All of Us research program for precision medicine.  PLoS One. 2023 Jul 17;18(7):e0288496. doi: 10.1371/journal.pone.0288496. eCollection 2023. PMID: 37459328
• Bhanvadia S, Radha Saseendrakumar B, Guo J, Daniel M, Lander L, Baxter SL  Evaluation of Bias in Medical Student Clinical Clerkship Evaluations Using Natural Language Processing. Acad Med. 2022 Nov 1;97(11S):S154. doi: 10.1097/ACM.0000000000004807. Epub 2022 Oct 18. PMID: 37460500
• Tavakoli K, Kalaw FGP, Bhanvadia S, Hogarth M, Baxter SL.  Concept Coverage Analysis of Ophthalmic Infections and Trauma among the Standardized Medical Terminologies SNOMED-CT, ICD-10-CM, and ICD-11.  Ophthalmol Sci. 2023 May 25;3(4):100337. doi: 10.1016/j.xops.2023.100337. eCollection 2023 Dec.  PMID: 37449050
• El-Kareh R, Brenner DA, Longhurst CA  Developing a highly-reliable learning health system.  Learn Health Syst. 2022 Oct 27;7(3):e10351. doi: 10.1002/lrh2.10351. eCollection 2023 Jul. PMID: 37448457
• Tully JL, Zhong W, Simpson S, Curran BP, Macias AA, Waterman RS, Gabriel RA. Machine Learning Prediction Models to Reduce Length of Stay at Ambulatory Surgery Centers Through Case Resequencing. J Med Syst. 2023 Jul 10;47(1):71. doi: 10.1007/s10916-023-01966-9. PMID: 37428267
• Seng EC, Mehdipour S, Simpson S, Gabriel RA. Tracking persistent postoperative opioid use: a proof-of-concept study demonstrating a use case for natural language processing.  Reg Anesth Pain Med. 2023 Jul 6:rapm-2023-104629. doi: 10.1136/rapm-2023-104629. Online ahead of print.  PMID: 37419509
• Vuyyuru SK, Solitano V, Hogan M, MacDonald JK, Zayadi A, Parker CE, Sands BE, Panaccione R, Narula N, Feagan BG, Singh S, Jairath V, Ma C. Efficacy and Safety of IL-12/23 and IL-23 Inhibitors for Crohn's Disease: Systematic Review and Meta-Analysis.  Dig Dis Sci. 2023 Jun 28. doi: 10.1007/s10620-023-08014-z. Online ahead of print. PMID: 37378711
• Lu B, Curtius K, Graham TA, Yang Z, Barnes CP.  CNETML: maximum likelihood inference of phylogeny from copy number profiles of multiple samples. Genome Biol. 2023 Jun 20;24(1):144. doi: 10.1186/s13059-023-02983-0. PMID: 37340508 
• Talwar JV, Laub D, Pagadala MS, Castro A, Lewis M, Luebeck GE, Gorman BR, Pan C, Dong FN, Markianos K, Teerlink CC, Lynch J, Hauger R, Pyarajan S, Tsao PS, Morris GP, Salem RM, Thompson WK, Curtius K, Zanetti M, Carter H. Autoimmune alleles at the major histocompatibility locus modify melanoma susceptibility.  Am J Hum Genet. 2023 Jun 13:S0002-9297(23)00170-2. doi: 10.1016/j.ajhg.2023.05.013. Online ahead of print. PMID: 37339630
• Gabriel RA, Park BH, Mehdipour S, Bongbong DN, Simpson S, Waterman RS. Leveraging a Natural Language Processing Model (Transformers) on Electronic Medical Record Notes to Classify Persistent Opiod Use After Surgery.  2023 Jun 20. doi: 10.1213/ANE.0000000000006579. Online ahead of print. PMID: 37339081 No abstract available. 
• Ayers JW, Zhu Z, Poliak A, Leas EC, Dredze M, Hogarth M, Smith DM. Evaluating Artificial Intelligence Responses to Public Health Questions.  JAMA Netw Open. 2023 Jun 1;6(6):e2317517. doi: 10.1001/jamanetworkopen.2023.17517. PMID: 37285160
•  Wu JH, Radha Saseendrakumar B, Moghimi S, Sidhu S, Kamalipour A, Weinreb RN, Baxter SL. Heliyon. Epidemiology and factors associated with cannabis use among patients with glaucoma in the All of Us Research Program.  2023 Apr 25;9(5):e15811. doi: 10.1016/j.heliyon.2023.e15811. eCollection 2023 May. PMID: 37215923 Free PMC article.
• Dameff C, Tully J, Chan TC, Castillo EM, Savage S, Maysent P, Hemmen TM, Clay BJ, Longhurst CA. Ransomware Attack Associated With Disruptions at Adjacent Emergency Departments in the US.  JAMA Netw Open. 2023 May 1;6(5):e2312270. doi: 10.1001/jamanetworkopen.2023.12270. PMID: 37155166
• Hogarth M, John D, Li Y, Wang-Rodriguez J, Chakladar J, Li WT, Mehta SR, Jain S, Ongkeko WM.  Clinical Characteristics and Comorbidities associated with SARS-CoV-2 breakthrough infection in the California Healthcare Systems. Am J Med Sci. 2023 May 3:S0002-9629(23)01166-7. doi: 10.1016/j.amjms.2023.04.019. Online ahead of print. PMID: 37146904 
• Lam JY, Richardson A, Kanegaye JT, Tremoulet AH, Shimizu C, Stadnick NA, Burns JC, Nemati S, Gardiner MA Implementation of KIDMATCH: A Clinical Decision Support Tool for Diagnosing Pediatric Patients with Multisystem Inflammatory Syndrome and Kawasaki Disease.  Lam JY, AMIA Annu Symp Proc. 2023 Apr 29;2022:653-661. eCollection 2022. PMID: 37128449
• Isakari M, Sanchez A, Conic R, Peretti J, Saito K, Sitapati AM, Millen M, Longhurst C. Benefits and Challenges of Transitioning Occupational Health to an Enterprise Electronic Health Record. J Occup Environ Med. 2023 Apr 12. doi: 10.1097/JOM.0000000000002864. Online ahead of print. PMID: 37043385
• Ohno-Machado L, Jiang X, Kuo TT, Tao S, Chen L, Ram PM, Zhang GQ, Xu H. A Hierarchical Strategy to Minimize Privacy Risk when Linking "De-identified" Data in Biomedical Research Consortia. J Biomed Inform. 2023 Feb 16:104322. doi: 10.1016/j.jbi.2023.104322. Online ahead of print. PMID: 36806328
•  Rogers P, Boussina AE, Shashikumar SP, Wardi G, Longhurst CA, Nemati S. J Med Internet Res. Optimizing the Implementation of Clinical Predictive Models to Minimize National Costs: Sepsis Case Study. 2023 Feb 13;25:e43486. doi: 10.2196/43486. PMID: 36780203
•  Lee TC, Radha-Saseendrakumar B, Delavar A, Ye GY, Ting MA, Topilow NJ, Bass J, Korn BS, Kikkawa DO, Baxter SL, Liu CY. Evaluation of Depression and Anxiety in a Diverse Population With Thyroid Eye Disease Using the Nationwide NIH All of Us Database.  Ophthalmic Plast Reconstr Surg. 2023 Jan 24. doi: 10.1097/IOP.0000000000002318. Online ahead of print.  PMID: 36727790
• Fatemeh Amrollahi, Supreeth P Shashikumar, Angela Meier, Lucila Ohno-Machado, Shamim Nemati, Gabriel Wardi, All of Us Data Helps Better Predict Hospital Readmission for Patients With Sepsis, National Institue of Health All of Us Research Program, October 4, 2022
• Fatemeh Amrollahi, Supreeth P Shashikumar, Angela Meier, Lucila Ohno-Machado, Shamim Nemati, Gabriel Wardi, Inclusion of social determinants of health improves sepsis readmission prediction models, Journal of the American Medical Informatics Association, Volume 29, Issue 7, July 2022, Pages 1263–1270
• Kuo, TT, Ohno-Machado L. Transforming Biomedical Informatics and Health Information Access: Don Lindberg and the U.S. National Library of Medicine, 978-1-64368-238-9 (print) | 978-1-64368-239-6 (online)
• Tong EK, Zhu SH, Anderson CM, Avdalovic MV, Amin AN, Diamant AL, Fong TW, Clay B, El-Kareh R, Sankaran S, Bonniot C, Kirby CA, Mayoral A, Sarna L. Implementation, Maintenance, and Outcomes of an Electronic Referral to a Tobacco Quitline Across Five Health Systems.  Nicotine Tob Res. 2023 Mar 29:ntad008. doi: 10.1093/ntr/ntad008. Online ahead of print.PMID: 36977494
• Kuo TT, Pham A, Edelson ME, Kim J, Chan J, Gupta Y, Ohno-Machado L; Blockchain-Enabled Immutable, Distributed, and Highly Available Clinical Research Activity Logging System for Federated COVID-19 Data Analysis from Multiple Institutions.   J Am Med Inform Assoc. 2023 Mar 14:ocad049. doi: 10.1093/jamia/ocad049. Online ahead of print. PMID: 36916740
• Nakagawa K, Moukheiber L, Celi LA, Patel M, Mahmood F, Gondim D, Hogarth M, Levenson R. AI in Pathology: What could possibly go wrong?  Semin Diagn Pathol. 2023 Mar 2:S0740-2570(23)00017-5. doi: 10.1053/j.semdp.2023.02.006. Online ahead of print. PMID: 36882343 Review. 
• D'Antonio M, Nguyen JP, Arthur TD; Fine mapping spatiotemporal mechanisms of genetic variants underlying cardiac traits and disease. iPSCORE Consortium; Matsui H, D'Antonio-Chronowska A, Frazer KA. Nat Commun. 2023 Feb 28;14(1):1132. doi: 10.1038/s41467-023-36638-2. PMID: 36854752
• Ohno-Machado L, Jiang X, Kuo TT, Tao S, Chen L, Ram PM, Zhang GQ, Xu H.A Hierarchical Strategy to Minimize Privacy Risk when Linking "De-identified" Data in Biomedical Research Consortia.  J Biomed Inform. 2023 Feb 16:104322. doi: 10.1016/j.jbi.2023.104322. Online ahead of print. PMID: 36806328
• Rogers P, Boussina AE, Shashikumar SP, Wardi G, Longhurst CA, Nemati S. Optimizing the Implementation of Clinical Predictive Models to Minimize National Costs: Sepsis Case Study.  J Med Internet Res. 2023 Feb 13;25:e43486. doi: 10.2196/43486. PMID: 36780203
• Lee TC, Radha-Saseendrakumar B, Delavar A, Ye GY, Ting MA, Topilow NJ, Bass J, Korn BS, Kikkawa DO, Baxter SL, Liu CY. Evaluation of Depression and Anxiety in a Diverse Population With Thyroid Eye Disease Using the Nationwide NIH All of Us Database. Ophthalmic Plast Reconstr Surg. 2023 Jan 24. doi: 10.1097/IOP.0000000000002318. Online ahead of print. PMID:  36727790. 
• Baxter, SL., Representation Matters - Diversity in Retina Clinical Trails.  PMID: 36201217, DOI: 10.1001/jamaophthalmol.2022.3930
• Matthews, B, Fredrickson, M, El-Kareh, R Structured case reviews for organizational learning about diagnostic vulnerabilities: initial experiences from two medical centers.& Diagnosis (Berl) 2020 Jan 28;7(1):27-35. doi: 10.1515/dx-2019-0032.
• Ohno-Machado L, Xu H. Coronavirus: indexed data speed up solutions. Nature 584, 192 (2020)

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