Past Biomedical Informatics Events
Awards and Conferences
- 08/25-29/2024 - MIE 2024, 34th Medical Informatics Europe Conference, Athens, Greece
- 07/9-12/2024 - AIME 2024 22nd International Conference on Artificial Intelligence in Medicine, Salt Lake City, UT
- 06/24-29/2024 -SIIM24 Annual Meeting + Informatics TECH Expo, National Harbor, MD
- 05/21-23/2024 - AMIA 2024 Clinical Informatics Conference, Minneapolis, MN
- 05/07-11/2024 - 37th Annual Biology of Genomes - Cold Springs Harbor Labority Meeting Cold Springs Harbor, NY
- 05/01/2024 - Virtual Meeting for advancing Research Careers (ARC) Predoc to Postdoc Transition Program (F99/K00) Applicants, Virtual Meeting
- 04/14-17/2024 - Alliance for Academic Internal Health - AIMW24 Opening Plenary Topic Announced: Artificial Intelligence in Medical Education, Columbus, MA
- 03/18-21/2024 - AMIA 2024 Informatics Summit, AMIA - American Medical Informatics Association, Boston MA
- 01/24-26/24 - PMWC 2024, PMWC - Original & Leading Precision Medicine World Conference. Silicon Valley, CA
- 11/11-15/23 - AMIA Annual Symposium, (https://amia.org/education-events/amia-2023-annual-symposium), New Orleans, LA
- 10/30-11/02/23 - North American Primary Care Research Group (NAPCRG) 51st Annual Meeting, Annual Meeting (napcrg.org), San Francisco, CA
- 10/24-26/23 - American College of Radiology, Quality & Safety +Informatics Conference, San Diego, CA
- 10/08-9-23 - The Society to Improve Diagnosis in Medicine (SIDM), The Future of Diagnosis Acheiving Excellence and Equity Schedule | SIDM Conference
- 10/11-13/23 - American Conference on Physician Health: Building the Workplace of the Future, 2023 American Conference on Physician Health: Building the Workplace of the Future (https://cmadocs.org)
- 09/3-6/23 - 14th ACM Conference on Bioinformatics, Computational Biology, and Health Informatics, ACM-BCB 2023 (https://acm-bcb.org/), Houston, TX
- 07/5-6/23 - CSHI 2023 Medinfo 2023 Pre-Conference, (https://www.cshi-imia.org/), Sydney, Austrailia
- 07/8-12/23 - MEDINFO23 International, (https://medinfo2023.org/), Sydney, Austrailia
- 06/21-23/23 National Library of Medicine (NLM) T15 Training Conference (https://med.stanford.edu/dbds/national-library-of-medicine--nlm--t15-training-conference-2023), Stanford, CA
- 06/26-29/23, 2023 IEEE 11th International Conference on Healthcare Informatics (ICHI) (https://conferences.ieee.org/conferences_events/), Houston, TX
- 5/23-25/23 - AMIA Clinical Informatics Conference, Clinical Informatics Conference | AMIA - American Medical Informatics Association, Chicago, IL
- 5/22-25/23 - MIE Medical Informatics Europe 2023, https://efmi.org/conferences-journals/mie-confererence/ , Goteborg, Sweden
- 5/12-14/23 - ICMHI 2023 - International Conference on Medical and health Informatics. ICMHI 2023 , Kyoto, Japan
- 5/6-12/23 - HL7 International FHIR Connection & Working Group Meeting, https://infocentral.infoway-inforoute.ca/en/forum/266-fhir-implementations/4892-hl7-connectathon-and-wgm-registration-may-6-12 . New Orleans, LA
- 4/16/19/23 - ACR Annual Meeting 2023, https://www.aacr.org/meeting/aacr-annual-meeting-2023/, Orlando, FL
- 3/10-12/23 - 2023 ANIA Annual Conference, 2023 ANIA Annual Conference | American Nursing Informatics Association, Louisville, KY
- 3/23-25/23 - AMIA Clinical Informatics Conference, https://amia.org/education-events/amia-2023-informatics-summit , Chicago, IL
- 3/13-16/23 - AMIA 2023 Informatics Summit, https://amia.org/education-events/amia-2023-informatics-summit , Seattle, WA
- 3/11-12/23 - HEIN 2023 International Conference on Health Informatics, https://hein2023.org, Virtual Event
- 3/6-8/23 - TRI-CON Molebular & Precision Med Conference, https://www.triconference.com , San Diego, CA
- 2/20/23 - Spring 2023 Society Symposium & Workshop, www.ci4cc.org, San Diego, CA
- 2/16-18/23 - HEALTHINFO 2023, 16th International Conference on Health Informatics HEALTHINFO 2023 - Conference (scitevents.org), LIsbon, Portugal
- Congratulations to Sally Baxter for being awarded the 2020 NIH Director's Early Independence Award.
- Congratulations to Margaret Donovan for being awarded her PhD, December 2019
- Congratulations to Dr. Ohno-Machado! For being elected as one of the National Academy of Medicine's 85 new members -- one of the highest honors one can receive in science.
- AND for receiving the 2019 AMIA William W. Stead Award for Thought Leadership in Informatics.
- 11/13 - DBMI was represented in the 1st International Conference of Africa Build, a project funded by the European Commission to improve information and communication technologies for health in four African countries. At the invite of Prof. Maojo from Madrid, we presented our work in building capacity in biomedical and health informatics in Mozambique. We also represented DBMI in the 4e. Journees Cameronaises d'Informatique Medicale sponsored by the Cameroonian Health Informatics Society in Yaonde, Cameroon.
- 11/13 - Fifteen delegates represented UCSD DBMI at the AMIA 2013 Symposium from November 16-20th at the Hilton Washington in Washington, DC. Edna Shenvi, Eric Levy, and Jing Zhang were finalists in the new student design competition. Mindy Ross led a DBMI team to win a distinguished poster award describing work developed under the course Data Modeling taught by Hyeon-eui Kim.
- 11/13 - Chun-Nan Hsu, PhD, was appointed Associate Professor in DBMI in November. Formerly at USC-ISI, Dr. Hsu is a computer scientist who is a senior member of the ACM and specializes in text mining related to genomics and proteomics. He is a member of the Academia Sinica and leads an NHGRI-funded program project for automated curation of GWAS.
- 10/13 - Two delegates represented DBMI at the 3rd Translational Bioinformatics Conference in Seoul, Korea. Two papers led by Shuang Wang and Zhanglong Ji were selected for journal submissions.
- 08/13 - We welcome our new graduate students: Zachary Lipton, Shamim Mollah, Kemal Eren, Stephanie Feudjio Feupe. We also thank our summer interns for their hard work and amazing presentations in our Summer Internship Workshop. We wish them all the success in completing their studies. View the videos of their presentations here.
- 07/13 - Inaugural class of DBMI students attend NLM training meeting.
- 03/13 - Best paper award received at AMIA Joint Summits on Clinical Research Informatics is given to Vaidya et al.
- 11/12 - We were at the AMIA 2012 Symposium and the CTSA Informatics Meeting in Chicago, and the NCBC Showcase in DC.
- 11/12 - Xiaoqian Jiang and Jialan Que (and their co-authors Jihoon Kim and Yuan Wu) were nominated as finalists for best student paper at the AMIA Annual Symposium for their papers entitled "Selecting Cases for Whom Additional Tests Can Improve Prognostication" and "A Collaborative Framework for Distributed Privacy-Preserving Support Vector Machine Learning", respectively.
- 10/12 - Stephanie Feudjio Feupe, short-term NLM trainee, received the Bronze Prize of the “Diabetes Technology Society Student Research Award" for work advised by Nate Heintzman entitled "Analysis of overnight continuous glucose and sleep stage data in subjects with type 1 diabetes in real world conditions"
- 09/12 - Awardees for best posters at the 2nd IEEE Conference on Healthcare informatics, Imaging, and Systems Biology were: Rutu Mulkar-Mehta and Melissa Tharp, who advised the work of summer intern Emily Silgard from the University of Washington; Xiaoqian Jiang, for collaborative work led by Seemeen Karimi (ECE); Neda Alipanah, for work advised by Hyeon-eui Kim.
- 08/11 - Zhanglong Ji (master's student) and Xiaoqian Jiang (postdoctoral fellow) led teams receiving first and second best poster awards at SuperData Summit in SD. Congrats!
- 02/11 - Lucila Ohno-Machado receives 2010 UC San Diego Equal Opportunity & Diversity Award
- 11/10 - Hyeoneui Kim, PhD, receives 2010 Harriet H Werley award from AMIA
- 11/10 - Aziz Boxwala elected to the American College of Medical Informatics
- 10/10 - DBMI team (J Kim, Boxwala, Ohno-Machado) gets 2010 Partners in Excellence Award
Grants
- 07/31/23 - AIVIS: Next Generation Vigilant Information Seeking Artificial Intelligence-based Clinical Support for Sepsis.
- 05/01/22 - Enhanced Metadata Design, Architecture, and Learning (MeDAL) for Development of Generalizable Deep Learning-based Predictive Analyics from Electronic Health Records.
- 03/30/23 - NIH Reporter: Lucila Ohno-Machado highest NIH awardee at UCSD and 3rd of all UCs.
- 02/15/22 - VentNet: A Real-Time Multimodal Data Integration Model for Prediction of Respiratory Failure in Patients with COVID-19.
- 09/01/21 - Center for Admixture Science and Technological Populations (CAST).
- 08/01/21 - GeneRAlizable Sepsis Phenotyping (GRASP) using Electronic Health Records and Continuous Monitoring Sensors.
- 12/01/20 - RAD-Rad Discoveries & Data: Consortium Coodination Center Program Organization (RADx-rad DCC).
- 04/04/20 - Rapid Response Data Discovery (R2D2) for COVID-19 Clinical Consultations.
- 10/01/19 - The Marylend Electronic Vital Records Registration System (MDEVRRS).
- 04/01/18 - NIH All of Us Research Program
- 05/01/18 - BECKON - Block Estimate Chain: creating Knowledge ON demand & protecting privacy.
- 12/01/17 - Protecting Privacy and Facilitating Shared Access of Clinical and Genetic Data of Special Populations (STRONG HEART).
- 01/01/17 - Decentralized Differentially-Private Methods for Dynamic Data Release and Analysis (DECENTRALIZED).
- 06/01/15 - Biomedical and Healthcare Data Discovery Index Ecosystem (bioCADDIE).
- 01/01/15 - Informed Consent for Clinical Data and Biosample Use in Research (iCONCUR).
- 09/01/14 - Protecting the Privacy of Genomes in Research Studies (PROGRESS).
- 09/01/14 - Project Privacy of Healthcare Data in the Cloud.
- 04/01/14 - patient-centered Scalable National Network for Effectiveness Research (pSCANNER).
- 10/01/13 - Linked grants to iDASH funded by NHGRI and NIBIB.
- 09/01/13 - DBMI awarded UH3 Phase of NHLBI pFINDR program.
- 09/01/12 - Protection of Records: Privacy (PReP) Technology for Medical Research
- 08/01/12 - DBMI awarded competitive ethics supplement and cloud supplement to U54 iDASH center.
- 07/01/12 - San Diego Biomedical informatics Education and Research NLM training grant is awarded for the first time to UCSD.
- 09/01/12 - UC Research eXchange grand from the UC Office of the President is awarded to all five UC medical centers. UCSD heads the steering committee in the inaugural year of this 5 year project to connect clinical data warehouses.
- 07/01/11 - DBMI awarded grant from the NHLBI pFINDR program: Phenotype Finder IN Data Resources: A Tool to Support Cross-study Data Discovery Among NHLBI Genomic Studies.
- 01/01/11 - University of California Research Exchange (UC REX).
- 10/22/10 - DBMI awarded NCBC and AHRQ Distributed Research Network grants
- 09/30/10 - DBMI will lead informatics development in Medical Education Partnership Initiative in Mozambique
- 09/30/10 - DBMI receives grant for Sustainable Health Informatics and Networking Environment (SHINE)
- 09/20/10 - Integrating Data for Analysis, Anonymization and SHaring (iDASH)
- 10/15/09 - Global Health Informatics Training Grant Awarded
Papers
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Johnson B, Shuai Y, Schweinsberg J, Curtius K. cloneRate: fast estimation of single-cell clonal dynamics using coalescent theory. Bioinformatics. 2023 Sep 12:btad561. doi: 10.1093/bioinformatics/btad561. Online ahead of print. PMID: 37699006
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Classen DC, Longhurst CA, Davis T, Milstein JA, Bates DW. Inpatient EHR User Experience and Hospital EHR Safety Performance. JAMA Netw Open. 2023 Sep 5;6(9):e2333152. doi: 10.1001/jamanetworkopen.2023.33152. PMID: 37695581
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Le JP, Shashikumar SP, Malhotra A, Nemati S, Wardi G. Making the Improbable Possible: Generalizing Models Designed for a Syndrome-Based, Heterogeneous Patient Landscape. Crit Care Clin. 2023 Oct;39(4):751-768. doi: 10.1016/j.ccc.2023.02.003. Epub 2023 Apr 26. PMID: 37704338 Review.
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Wu JH, Varkhedi V, Radha Saseendrakumar B, Acuff K, Weinreb RN, Baxter SL. Social and Healthcare Utilization Factors Associated With Ophthalmic Visit Non-adherence in Glaucoma: an All of Us study. J Glaucoma. 2023 Aug 29. doi: 10.1097/IJG.0000000000002300. PMID: 37671531
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Aronoff-Spencer E, Mazrouee S, Graham R, Handcock MS, Nguyen K, Nebeker C, Malekinejad M, Longhurst CA. Exposure notification system activity as a leading indicator for SARS-COV-2 caseload forecasting. PLoS One. 2023 Aug 18;18(8):e0287368. doi: 10.1371/journal.pone.0287368. eCollection 2023. PMID: 37594936
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Leggat-Barr K, Ryu R, Hogarth M, Stover-Fiscalini A, Veer LV', Park HL, Lewis T, Thompson C, Borowsky A, Hiatt RA, LaCroix A, Parker B, Madlensky L, Naeim A, Esserman L. Early Ascertainment of Breast Cancer Diagnoses Comparing Self-Reported Questionnaires and Electronic Health Record Data Warehouse: The WISDOM Study. JCO Clin Cancer Inform. 2023 Aug;7:e2300019. doi: 10.1200/CCI.23.00019. PMID: 37607323
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Aruljothy A, Singh S, Narula N, Moran GW, Vuyyuru SK, Hogan M, Zayadi A, MacDonald JK, Caron B, Danese S, Peyrin Biroulet L, Ma C, Jairath V. Systematic review with meta-analysis: Medical therapies for treatment of ulcerative proctitis. Aliment Pharmacol Ther. 2023 Aug 17. doi: 10.1111/apt.17666. Online ahead of print. PMID: 37589498 Review.
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Kashani KB, Awdishu L, Bagshaw SM, Barreto EF, Claure-Del Granado R, Evans BJ, Forni LG, Ghosh E, Goldstein SL, Kane-Gill SL, Koola J, Koyner JL, Liu M, Murugan R, Nadkarni GN, Neyra JA, Ninan J, Ostermann M, Pannu N, Rashidi P, Ronco C, Rosner MH, Selby NM, Shickel B, Singh K, Soranno DE, Sutherland SM, Bihorac A, Mehta RL. Digital health and acute kidney injury: consensus report of the 27th Acute Disease Quality Initiative workgroup. Nat Rev Nephrol. 2023 Aug 14. doi: 10.1038/s41581-023-00744-7. Online ahead of print. PMID: 37580570 Review.
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Acuff K, Radha Saseendrakumar B, Wu JH, Weinreb RN, Baxter SL. Racial, Ethnic, and Socioeconomic Disparities in Glaucoma Onset and Severity in A Diverse Nationwide Cohort in the United States. J Glaucoma. 2023 Jul 18. doi: 10.1097/IJG.0000000000002261. Online ahead of print. PMID: 37523618
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Tai-Seale M, Baxter S, Millen M, Cheung M, Zisook S, Çelebi J, Polston G, Sun B, Gross E, Helsten T, Rosen R, Clay B, Sinsky C, Ziedonis DM, Longhurst CA, Savides TJ. Association of physician burnout with perceived EHR work stress and potentially actionable factors. J Am Med Inform Assoc. 2023 Jul 20:ocad136. doi: 10.1093/jamia/ocad136. Online ahead of print. PMID: 37475168
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Keeler Bruce L, Paul P, Kim KK, Kim J, Keegan THM, Hiatt RA, Ohno-Machado L; All of Us Research Program Investigators. Family and personal history of cancer in the All of Us research program for precision medicine. PLoS One. 2023 Jul 17;18(7):e0288496. doi: 10.1371/journal.pone.0288496. eCollection 2023. PMID: 37459328
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Bhanvadia S, Radha Saseendrakumar B, Guo J, Daniel M, Lander L, Baxter SL Evaluation of Bias in Medical Student Clinical Clerkship Evaluations Using Natural Language Processing. Acad Med. 2022 Nov 1;97(11S):S154. doi: 10.1097/ACM.0000000000004807. Epub 2022 Oct 18. PMID: 37460500
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Tavakoli K, Kalaw FGP, Bhanvadia S, Hogarth M, Baxter SL. Concept Coverage Analysis of Ophthalmic Infections and Trauma among the Standardized Medical Terminologies SNOMED-CT, ICD-10-CM, and ICD-11. Ophthalmol Sci. 2023 May 25;3(4):100337. doi: 10.1016/j.xops.2023.100337. eCollection 2023 Dec. PMID: 37449050
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El-Kareh R, Brenner DA, Longhurst CA Developing a highly-reliable learning health system. Learn Health Syst. 2022 Oct 27;7(3):e10351. doi: 10.1002/lrh2.10351. eCollection 2023 Jul. PMID: 37448457
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Tully JL, Zhong W, Simpson S, Curran BP, Macias AA, Waterman RS, Gabriel RA. Machine Learning Prediction Models to Reduce Length of Stay at Ambulatory Surgery Centers Through Case Resequencing. J Med Syst. 2023 Jul 10;47(1):71. doi: 10.1007/s10916-023-01966-9. PMID: 37428267
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Seng EC, Mehdipour S, Simpson S, Gabriel RA. Tracking persistent postoperative opioid use: a proof-of-concept study demonstrating a use case for natural language processing. Reg Anesth Pain Med. 2023 Jul 6:rapm-2023-104629. doi: 10.1136/rapm-2023-104629. Online ahead of print. PMID: 37419509
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Vuyyuru SK, Solitano V, Hogan M, MacDonald JK, Zayadi A, Parker CE, Sands BE, Panaccione R, Narula N, Feagan BG, Singh S, Jairath V, Ma C. Efficacy and Safety of IL-12/23 and IL-23 Inhibitors for Crohn's Disease: Systematic Review and Meta-Analysis. Dig Dis Sci. 2023 Jun 28. doi: 10.1007/s10620-023-08014-z. Online ahead of print. PMID: 37378711
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Lu B, Curtius K, Graham TA, Yang Z, Barnes CP. CNETML: maximum likelihood inference of phylogeny from copy number profiles of multiple samples. Genome Biol. 2023 Jun 20;24(1):144. doi: 10.1186/s13059-023-02983-0. PMID: 37340508
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Talwar JV, Laub D, Pagadala MS, Castro A, Lewis M, Luebeck GE, Gorman BR, Pan C, Dong FN, Markianos K, Teerlink CC, Lynch J, Hauger R, Pyarajan S, Tsao PS, Morris GP, Salem RM, Thompson WK, Curtius K, Zanetti M, Carter H. Autoimmune alleles at the major histocompatibility locus modify melanoma susceptibility. Am J Hum Genet. 2023 Jun 13:S0002-9297(23)00170-2. doi: 10.1016/j.ajhg.2023.05.013. Online ahead of print. PMID: 37339630
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Gabriel RA, Park BH, Mehdipour S, Bongbong DN, Simpson S, Waterman RS. Leveraging a Natural Language Processing Model (Transformers) on Electronic Medical Record Notes to Classify Persistent Opiod Use After Surgery. 2023 Jun 20. doi: 10.1213/ANE.0000000000006579. Online ahead of print. PMID: 37339081 No abstract available.
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Ayers JW, Zhu Z, Poliak A, Leas EC, Dredze M, Hogarth M, Smith DM. Evaluating Artificial Intelligence Responses to Public Health Questions. JAMA Netw Open. 2023 Jun 1;6(6):e2317517. doi: 10.1001/jamanetworkopen.2023.17517. PMID: 37285160
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Wu JH, Radha Saseendrakumar B, Moghimi S, Sidhu S, Kamalipour A, Weinreb RN, Baxter SL. Heliyon. Epidemiology and factors associated with cannabis use among patients with glaucoma in the All of Us Research Program. 2023 Apr 25;9(5):e15811. doi: 10.1016/j.heliyon.2023.e15811. eCollection 2023 May. PMID: 37215923 Free PMC article.
- Dameff C, Tully J, Chan TC, Castillo EM, Savage S, Maysent P, Hemmen TM, Clay BJ, Longhurst CA. Ransomware Attack Associated With Disruptions at Adjacent Emergency Departments in the US. JAMA Netw Open. 2023 May 1;6(5):e2312270. doi: 10.1001/jamanetworkopen.2023.12270. PMID: 37155166
- Hogarth M, John D, Li Y, Wang-Rodriguez J, Chakladar J, Li WT, Mehta SR, Jain S, Ongkeko WM. Clinical Characteristics and Comorbidities associated with SARS-CoV-2 breakthrough infection in the California Healthcare Systems. Am J Med Sci. 2023 May 3:S0002-9629(23)01166-7. doi: 10.1016/j.amjms.2023.04.019. Online ahead of print. PMID: 37146904
- Lam JY, Richardson A, Kanegaye JT, Tremoulet AH, Shimizu C, Stadnick NA, Burns JC, Nemati S, Gardiner MA Implementation of KIDMATCH: A Clinical Decision Support Tool for Diagnosing Pediatric Patients with Multisystem Inflammatory Syndrome and Kawasaki Disease. Lam JY, AMIA Annu Symp Proc. 2023 Apr 29;2022:653-661. eCollection 2022. PMID: 37128449
- Isakari M, Sanchez A, Conic R, Peretti J, Saito K, Sitapati AM, Millen M, Longhurst C. Benefits and Challenges of Transitioning Occupational Health to an Enterprise Electronic Health Record. J Occup Environ Med. 2023 Apr 12. doi: 10.1097/JOM.0000000000002864. Online ahead of print. PMID: 37043385
- Ohno-Machado L, Jiang X, Kuo TT, Tao S, Chen L, Ram PM, Zhang GQ, Xu H. A Hierarchical Strategy to Minimize Privacy Risk when Linking "De-identified" Data in Biomedical Research Consortia. J Biomed Inform. 2023 Feb 16:104322. doi: 10.1016/j.jbi.2023.104322. Online ahead of print. PMID: 36806328
- Rogers P, Boussina AE, Shashikumar SP, Wardi G, Longhurst CA, Nemati S. J Med Internet Res. Optimizing the Implementation of Clinical Predictive Models to Minimize National Costs: Sepsis Case Study. 2023 Feb 13;25:e43486. doi: 10.2196/43486. PMID: 36780203
- Lee TC, Radha-Saseendrakumar B, Delavar A, Ye GY, Ting MA, Topilow NJ, Bass J, Korn BS, Kikkawa DO, Baxter SL, Liu CY. Evaluation of Depression and Anxiety in a Diverse Population With Thyroid Eye Disease Using the Nationwide NIH All of Us Database. Ophthalmic Plast Reconstr Surg. 2023 Jan 24. doi: 10.1097/IOP.0000000000002318. Online ahead of print. PMID: 36727790
- Fatemeh Amrollahi, Supreeth P Shashikumar, Angela Meier, Lucila Ohno-Machado, Shamim Nemati, Gabriel Wardi, All of Us Data Helps Better Predict Hospital Readmission for Patients With Sepsis, National Institue of Health All of Us Research Program, October 4, 2022
- Fatemeh Amrollahi, Supreeth P Shashikumar, Angela Meier, Lucila Ohno-Machado, Shamim Nemati, Gabriel Wardi, Inclusion of social determinants of health improves sepsis readmission prediction models, Journal of the American Medical Informatics Association, Volume 29, Issue 7, July 2022, Pages 1263–1270
- Kuo, TT, Ohno-Machado L. Transforming Biomedical Informatics and Health Information Access: Don Lindberg and the U.S. National Library of Medicine, 978-1-64368-238-9 (print) | 978-1-64368-239-6 (online)
- Tong EK, Zhu SH, Anderson CM, Avdalovic MV, Amin AN, Diamant AL, Fong TW, Clay B, El-Kareh R, Sankaran S, Bonniot C, Kirby CA, Mayoral A, Sarna L. Implementation, Maintenance, and Outcomes of an Electronic Referral to a Tobacco Quitline Across Five Health Systems. Nicotine Tob Res. 2023 Mar 29:ntad008. doi: 10.1093/ntr/ntad008. Online ahead of print.PMID: 36977494
- Kuo TT, Pham A, Edelson ME, Kim J, Chan J, Gupta Y, Ohno-Machado L; Blockchain-Enabled Immutable, Distributed, and Highly Available Clinical Research Activity Logging System for Federated COVID-19 Data Analysis from Multiple Institutions. J Am Med Inform Assoc. 2023 Mar 14:ocad049. doi: 10.1093/jamia/ocad049. Online ahead of print. PMID: 36916740
- Nakagawa K, Moukheiber L, Celi LA, Patel M, Mahmood F, Gondim D, Hogarth M, Levenson R. AI in Pathology: What could possibly go wrong? Semin Diagn Pathol. 2023 Mar 2:S0740-2570(23)00017-5. doi: 10.1053/j.semdp.2023.02.006. Online ahead of print. PMID: 36882343 Review.
- D'Antonio M, Nguyen JP, Arthur TD; Fine mapping spatiotemporal mechanisms of genetic variants underlying cardiac traits and disease. iPSCORE Consortium; Matsui H, D'Antonio-Chronowska A, Frazer KA. Nat Commun. 2023 Feb 28;14(1):1132. doi: 10.1038/s41467-023-36638-2. PMID: 36854752
- Ohno-Machado L, Jiang X, Kuo TT, Tao S, Chen L, Ram PM, Zhang GQ, Xu H.A Hierarchical Strategy to Minimize Privacy Risk when Linking "De-identified" Data in Biomedical Research Consortia. J Biomed Inform. 2023 Feb 16:104322. doi: 10.1016/j.jbi.2023.104322. Online ahead of print. PMID: 36806328
- Rogers P, Boussina AE, Shashikumar SP, Wardi G, Longhurst CA, Nemati S. Optimizing the Implementation of Clinical Predictive Models to Minimize National Costs: Sepsis Case Study. J Med Internet Res. 2023 Feb 13;25:e43486. doi: 10.2196/43486. PMID: 36780203
- Lee TC, Radha-Saseendrakumar B, Delavar A, Ye GY, Ting MA, Topilow NJ, Bass J, Korn BS, Kikkawa DO, Baxter SL, Liu CY. Evaluation of Depression and Anxiety in a Diverse Population With Thyroid Eye Disease Using the Nationwide NIH All of Us Database. Ophthalmic Plast Reconstr Surg. 2023 Jan 24. doi: 10.1097/IOP.0000000000002318. Online ahead of print. PMID: 36727790.
- Baxter, SL., Representation Matters - Diversity in Retina Clinical Trails. PMID: 36201217, DOI: 10.1001/jamaophthalmol.2022.3930
- Matthews, B, Fredrickson, M, El-Kareh, R Structured case reviews for organizational learning about diagnostic vulnerabilities: initial experiences from two medical centers.& Diagnosis (Berl) 2020 Jan 28;7(1):27-35. doi: 10.1515/dx-2019-0032.
- Ohno-Machado L, Xu H. Coronavirus: indexed data speed up solutions. Nature 584, 192 (2020)
- Ohno-Machado L et al. https://today.ucsd.edu/story/uc-san-diego-ranked-8th-globally-for-most-influential-researchers UC San Diego Today (Nov. 2022)
- Jiang X et al. Recent trends in biomedical informatics: a study based on JAMIA articles. JAMIA (Nov. 2013)
- Jiang W et al. WebGLORE: a Web service for Grid LOgistic REgression. Bioinformatics (Sep 2013)
- Lin et al. Feasibility of Using Clinical Element Models (CEM) to Standardize Phenotype Variables in the Database of Genotypes and Phenotypes (dbGaP). PLoS ONE
- Doan et al. PhenDisco: phenotype discovery system for the database of genotypes and phenotypes. JAMIA
- Review by El-Kareh et al.: Use of health information technology to reduce diagnostic errors.
- Article by the SCANNER team (H Kim, Boxwala): Identifying Appropriate Reference Data Models for Comparative Effectiveness Research (CER) Studies Based on Data from Clinical Information Systems.
- Privacy technology review by Jiang et al.: Privacy technology to support data sharing for comparative effectiveness research: a systematic review.
- Privacy policy article by the SCANNER team (Ohno-Machado): Development of a privacy and security policy framework for a multistate comparative effectiveness research network.
- Review by Conway et al.: Using chief complaints for syndromic surveillance: A review of chief complaint based classifiers in North America.
- Privacy technology article by Wang, Jiang et al.: EXpectation Propagation LOgistic REgRession (EXPLORER): Distributed Privacy-Preserving Online Model Learning
- Open access article by Yuan Wu, Xiaoqian Jiang, Jihoon Kim, and Lucila Ohno-Machado: Grid Binary Logistic Regression (GLORE): Sharing Models without Sharing Data.
- Article by Adela Grando and Aziz Boxwala: Argumentation logic for the flexible enactment of goal-based medical guidelines.
- Distinguished Paper at AMIA CRI Summit 2012: open access article by Xiaoqian Jiang, Aziz Boxwala, Robert El-Kareh, Jihoon Kim, and Lucila Ohno-Machado: A patient-driven adaptive prediction technique to improve personalized risk estimation for clinical decision support .
- Jan 2012 - El-Kareh et al: Impact of Automated Alerts on Follow-Up of Post-Discharge Microbiology Results: A Cluster Randomized Controlled Trial just published online at JGIM.
Events and News
03/11/2024 - Jennifer P. Nguyen Dissertation: UCSD Bioinformatics and Systems Biology Graduate Program PhD. Dissertation Defense Announcement, "Using multi-omic OTL analysis in fetal-like pancreatic progenitor cells to characterize diabetes-associated regulatory viriants during early development".
01/05/2024 - Comgratulations to Ming Tai-Seale, PhD, MPH, Michael Hogarth, MD and Crystal Wiley Cene, MD, MPH. UC San Diego Receives $5 Million to launch Center for Learning Health Systems Science. The center will provide training for clinicians and researchers in the science of optimizing health care delivery. UC San Diego Receives $5 Million to Launch Center for Learning Health Systems Science (ucsd.edu)
08/01/13 - Congratulations to Michael Conway, PhD, who is becoming Assistant Project Scientist at the Department of Family and Preventive Medicine. Michael was a postdoctoral fellow with DBMI from 2011-2013. He has authored several papers and has recently received a K99/R00 from the NLM/NIH focused on mining of social media for health conditions.
07/01/13 - Congratulations to Robert El-Kareh, MD, MS, MPH, who is starting his K22 award from the NLM/NIH focusing on diagnostic errors.
06/01/13 - Congratulations to Xiaoqian Jiang, PhD, who became Assistant Professor at DBMI July 1, 2013. Xiaoqian was a graduate intern while finishing his PhD under the supervision of Latanya Sweeney, PhD, at CMU, then a postdoctoral fellow with DBMI from 2011-2013. He has authored several papers and is starting the R00 phase of his K99/R00 award from the NLM/NIH focused on privacy technology.
04/01/13 - Master's graduate Myoung Lah launched a new UCSD-wide application before taking a position at Microsoft: TritonSchedule allows UCSD students to share their course schedule with their friends on Facebook. We are studying how social networks and Facebook usage affect academic performance, health, and attitudes on privacy as part of the iDASH project.
09/22/12 - The BRIGHT program successfully organized the 2nd Biomedical Informatics Symposium in Maputo, Mozambique, August 20-22, 2012 with attendance of over 80 participants from 5 different countries.
07/01/12 - UCSD got awarded for the first time a biomedical informatics training grant from the NIH (National Library of Medicine). The grant started July 1, 2012 and will support a total of 15 trainees in UCSD degree programs. Click here for more Graduate Program Information.
03/29/12 - iDASH featured in White House Office for Science and Technology Policy announcement for BIG DATA initiative involving NSF, NIH, DoE, DoD, and other federal agencies. See video of this event online.
05/02/11 - iDASH NLP Ecosystem Workshop
01/24/11 - iDASH Workshop on Secondary Use of Clinical Images for Research at SDSC
08/01/10 - Global Health Informatics: UCSD, UEM, UNIFESP partner in training program
05/25/10 - JAMIA Editor-in-Chief appointed
04/09/10 - Bioinformatics and the SD economy
12/01/09 - AMIA Annual Symposium