Biomedical Informatics Publications

• Baxter, SL., Representation Matters - Diversity in Retina Clinical Trails.   PMID: 36201217, DOI: 10.1001/jamaophthalmol.2022.3930
• Matthews, B, Fredrickson, M, El-Kareh, R Structured case reviews for organizational learning about diagnostic vulnerabilities: initial experiences from two medical centers.&
  Diagnosis (Berl) 2020 Jan 28;7(1):27-35. doi: 10.1515/dx-2019-0032.
• Ohno-Machado L, Xu H. Coronavirus: indexed data speed up solutions. Nature 584, 192 (2020)
• Reeves J, Hollandsworth H, Longhurst, CA Rapid response to COVID-19: health informatics support for outbreak management in an academic health system.  2020 Jun 1;27(6):853-859. doi: 10.1093/jamia/ocaa037.
• Shashikumar, S, Paul, P, Nemati, S Development and Prospective Validation of a Transparent Deep Learning Algorithm for Predicting Need for Mechanical Ventilation.  2020 Jun 3;2020.05.30.20118109. doi: 10.1101/2020.05.30.20118109. Preprint
• Shashikumar, S., Wardi, G., Malhotra, A. Nemati, S.  Artificial intelligence sepsis prediction algorithm learns to say “I don’t know”  2021 Sept. doi: doi.org/10.1038/s41746-021-00504-6
• Bonomi, L., Huang, Y. & Ohno-Machado, L. Privacy challenges and research opportunities for genomic data sharing. Nat Genet 52, 646–654 (2020).
• Kuo T, Gabriel R, Cidambi K, Ohno-Machado, L, EXpectation Propagation LOgistic REgRession on permissioned blockCHAIN (ExplorerChain): decentralized online healthcare/genomics predictive model learning.  Journal of the American Medical Informatics Association, Volume 27, Issue 5, May 2020, Pages 747–756
• Tully J, Dameff C, Longhurst CA.  Wave of Wearables: Clinical Management of Patients and the Future of Connected Medicine. Clin Lab Med. 2020 Mar;40(1):69-82. doi: 10.1016/j.cll.2019.11.004. Epub 2020 Jan 7. Review. PMID: 32008641 [PubMed - in process].
• Dow, M., Pyke, R. M., Tsui, B. Y., Alexandrov, L. B., Nakagawa, H., Taniguchi, K., … Font-Burgada, J. Integrative genomic analysis of mouse and human hepatocellular carcinoma. Proceedings of the National Academy  of Sciences. 2018. doi: 10.1073/pnas.1811029115
• Kim J, Kim H, Bell E, Bath T, Paul P, Pham A, Jiang X, Zheng K, Ohno-Machado L.  Patient Perspectives About Decisions to Share Medical Data and Biospecimens for Research.  JAMA Netw Open. 2019 Aug 2;2(8):e199550. doi: 10.1001/jamanetworkopen.2019.9550.
• Singh, S., Hou, J.  Treat-to-Target of Endoscopic Remission in Patients with Inflammatory Bowel Diseases in Symptomatic Remission: A Pragmatic Randomized Controlled Trial, PCORI Patient-Centered Outcomes Research Institute Research Project, 2021

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