Aaron Broukim
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Full Name
Research Interests
Education
Contact
Brian Daniel Johnson
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Full Name
Research Interests
Education
Contact
David Brian Laub
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Full Name
Research Interests
Education
Contact
Grace Yu
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Full Name
Research Interests
Education
Contact
Hyrum Surya Eddington
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BISB PhD Student
Research Interests
Education
Projects
Contact
Jonathan Lam
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BISB Ph.D. Student
Research Interests
Artificial intelligence for disease diagnosis, Data privacy and storage using blockchainEducation
B.S. in Neurobiology, University of Washington (2017)- Selected Publications
Bevacqua R, Dai X, Lam JY, Gu X, Friedlander M, Tellez K, et al. CRISPR-based genome editing in primary human pancreatic islet cells. Nature Communications (2021) - Bevacqua R, Lam JY, Peiris H, Whitener RL, Kim S, Gu X, Kim SK. SIX2 and SIX3 coordinately regulate functional maturity and fate of human pancreatic cells. Genes and Development (2021)
- The Tabula Muris Consortium et al. A single-cell transcriptomic atlas characterizes ageing tissues in the mouse. Nature (2020)
- The Tabula Muris Consortium et al. Single-cell transcriptomics of 20 mouse organs creates a Tabula Muris. Nature (2018)
- Peiris H, Park S, Louis S, Gu X, Lam JY, Asplund O, Ippolito GC, Bottino R, Groop L, Tucker H, Kim SK. Discovering human diabetes-risk gene function with genetics and physiological assays. Nature Communications (2018)
- Melief EJ, McKinley JW, Lam JY, Whiteley N, Bamford NS, Palmiter RD, Darvas M. (2018) Loss of glutamate signaling from the thalamus to dorsal striatum impairs motor function and slows the execution of learned behaviors. npj Parkinson's Disease (2018)
Contact
j7lam@ucsd.edu - Selected Publications
Kuan-Hung (Peter) Yeh
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BISB PhD Student
Research Interests
Real-World Evidence (RWE), Survival Analysis, Precision Oncology, Clinical Trials
Education
M.S. in Biostatistics, University of California, Los Angeles (UCLA)
B.S. in Public Health, National Taiwan University (NTU)
Contact
Samuel R. Reynolds
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BISB PhD Student
Research Interests
Epigenomics, Understanding the tumor microenvironment, Cancer modeling
Education
B.A. in Biological Sciences, Dartmouth College, 2023
Selected Publications
Reynolds, S. R., Zhang, Z., Salas, L. A., & Christensen, B. C. (2024). Tumor microenvironment deconvolution identifies cell-type-independent aberrant DNA methylation and gene expression in prostate cancer. Clinical epigenetics, 16(1), 5. https://doi.org/10.1186/s13148-023-01609-3Reynolds, S. R., Salas, L. A., Chen, J. Q., & Christensen, B. C. (2024). Detailed immune profiling in pediatric Crohn's disease using methylation cytometry. Epigenetics, 19(1), 2289786. https://doi.org/10.1080/15592294.2023.2289786Zhang, Z., Reynolds, S. R., Stolrow, H. G., Chen, J.-Q., Christensen, B. C., & Salas, L. A. (2023). Deciphering the role of immune cell composition in epigenetic age acceleration: Insights from cell-type deconvolution applied to human blood epigenetic clocks. Aging Cell, 00, e14071. https://doi.org/10.1111/acel.14071Contact
Timothy Viet Pham
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Bioinformatics and Systems Biology PhD Student
Contact: tvp005@health.ucsd.edu
Varshini Sathish
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BISB PhD Student
Research Interests
Predictive modeling using machine/deep learning, disease management, precision medicine, genomics
Education
B.S. in Bioengineering: Bioinformatics, University of California, San Diego (2023)
Selected Publications
Jia H, Simpson S, Sathish V, et al. Development and benchmarking of machine learning models to classify patients suitable for outpatient lower extremity joint arthroplasty. J Clin Anesth. 2023;88:111147. doi:10.1016/j.jclinane.2023.111147Simpson S, Zhong W, Mehdipour S, Armaneous M, Sathish V, Walker N, Said ET, Gabriel RA. Classifying high risk patients for persistent opioid use after major spine surgery: A machine learning approach. Anesth Analg 2024Contact
Wilfredo Gabriel Gonzalez-Rivera
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BISB PhD Student
Research Interests
Precision Medicine, Genetics, Genomics, Social Science in Genomics
Research Focus: "I aim to increase recognition of the importance of including underrepresented racial and ethnic groups in genomic research to improve the accuracy and generalizability of precision medicine for all."
Education
B.S. Computer Science - University of Puerto Rico, Mayaguez, 2021
B.S. Industrial Biotechnology - University of Puerto Rico, Mayaguez, 2021Awards
STARS Graduate Advocate, 2023
Alfred P. Sloan Scholar Fellowship, 2022
Competitive Edge Scholar, 2022Contact
Ziqi Xu
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BISB PhD Student
Research Interests
Education
Selected Publications
Contact